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How to test AI agents effectively (5 tips)

Jon Gitlin
Senior Content Marketing Manager
at Merge

Since AI agents rely on large language models (LLMs) that can hallucinate or misinterpret instructions, they can take harmful actions—from sharing Social Security numbers with unauthorized individuals to creating tickets with inaccurate or misleading context.

To help prevent any harmful agentic actions, you can test each agent rigorously. 

We’ll show you how through several best practices, but first, let’s align on a definition for testing AI agents

What is AI agent testing?

AI agent testing is the process of evaluating an agent’s behavior across inputs to verify that it selects the right tools and generates outputs that meet predefined expectations or performance metrics.

Related: Overview on authenticating AI agents

Best practices for testing AI agents

We’ll break down a few measures you can follow and how Merge Agent Handler’s Evaluation Suite can support each.

Measure your agents’ hit rates across tools

Hit rate is the percentage of time that an agent calls a specific tool when it needs to.

How the hit rate is calculated
How the hit rate is calculated

To measure this, you can define a wide range of scenarios for calling a specific tool. For example, a reference scenarios for creating a Jira issue can look as follows:

{
  "input": "Please create a Jira issue for a bug on the login page. The error says 'Invalid credentials' when users try to sign in.",
  "reference_tool_calls": [
    {
      "name": "create_issue",
      "arguments": {
        "title": "Bug: Login page error 'Invalid credentials'",
        "description": "Users encounter an 'Invalid credentials' error when attempting to sign in via the login page.",
        "priority": "High",
        "project": "Website"
      }
    }
  ]
}

You can also determine how precise you want to be when assessing the test tool calls. For example, if your test output precisely matches this tool call, your hit rate is successful. But if the text match isn’t entirely the same (e.g., minor variations in wording), you may still want it to fail—even if the outputs still have the same semantic meaning.

Merge Agent Handler lets you define a wide range of reference tool calls and control how strict the comparisons are between those references and the agent’s test tool calls
Merge Agent Handler lets you define a wide range of reference tool calls and control how strict the comparisons are between those references and the agent’s test tool calls

Set up pass/fail checks on your agents’ test outputs

To quickly determine whether an agent produces the correct outputs for any prompt, you can set up a test where you:

  • Use a specific prompt(s)
  • Add labels for all the potential outputs
  • Mark a certain label(s) as passing and the rest as failing

For instance, you can use a prompt like “The website is down. Should we create a Jira issue that’s marked as 'High Priority?'” and the labels can include “Yes” or “No.”

In this case, “Yes” is a passing label, as the website going down is clearly a high priority issue.

Merge Agent Handler lets you create custom pass/fail evaluations, as described above
Merge Agent Handler lets you create custom pass/fail evaluations, as described above

Related: Best practices for managing your AI agents

Re-run every test when your agents’ underlying models change

LLMs can vary significantly from one another, and these differences can translate to meaningful changes on your agents’ behaviors. For example, a newer model might phrase tool arguments differently or interpret instructions more loosely than before.

To ensure the model changes aren’t changing your agents in undesirable ways—and to course correct quickly if they do—you can re-run all of your existing tests.

Merge Agent Handler lets you save evaluations, or tests, allowing you to re-run them at any point in the future with ease
Merge Agent Handler lets you save evaluations, or tests, allowing you to re-run them at any point in the future with ease

Test every LLM your agents might use

If your agents can use different LLMs depending on the customer’s plan, the prompt used, or other factors, it’s worth expanding each test to cover every model.

This also lets you isolate potential issues by LLM, enabling you to identify where certain models may underperform (e.g., invoke the wrong tools).

Merge Agent Handler lets you evaluate any model through a dropdown
Merge Agent Handler lets you evaluate any model through a dropdown

Test each MCP server you plan to use in production

Official MCP servers are often deployed with gaps, such as missing or inconsistent tool metadata and weak authentication. In many cases, they also aren’t maintained properly.

To avoid using poorly implemented and/or maintained MCP servers, or connectors, you should test them against your projected prompts. This should include edge cases, malformed inputs, permission constraints, and “adversarial” scenarios (e.g., prompt injection attempts).

You can test any connector in Merge Agent Handler with ease
You can test any connector in Merge Agent Handler with ease

Related: How to test MCP servers effectively

Challenges of testing AI agents

Unfortunately, the process of testing agents can prove difficult, if not impossible, for several reasons.

  • You can run endless tests . Because your AI agents handle open-ended prompts, it’s impossible to predict every scenario they’ll encounter. As a result, your tests can only provide a snapshot of your agents’ performance
  • Tests aren’t fully indicative of what’ll happen in production. Since LLMs are non-deterministic, their responses can change between runs—even when everything else stays the same. This means the best testing can do is validate that your agents behave consistently enough and fail gracefully when they don’t
  • It's hard to build testing infrastructure in-house. Designing, executing, and maintaining tests across multiple LLMs, prompts, connectors, and more requires deep expertise, significant engineering effort, and ongoing maintenance. And as your agents and connectors grow in number and complexity, the effort required to keep your tests comprehensive and reliable will only scale exponentially

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Jon Gitlin
Senior Content Marketing Manager
@Merge

Jon Gitlin is the Managing Editor of Merge's blog. He has several years of experience in the integration and automation space; before Merge, he worked at Workato, an integration platform as a service (iPaaS) solution, where he also managed the company's blog. In his free time he loves to watch soccer matches, go on long runs in parks, and explore local restaurants.

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But Merge isn’t just a Unified 
API product. Merge is an integration platform to also manage customer integrations.  gradient text
But Merge isn’t just a Unified 
API product. Merge is an integration platform to also manage customer integrations.  gradient text
But Merge isn’t just a Unified 
API product. Merge is an integration platform to also manage customer integrations.  gradient text